MirGeneDB ID | Pfl-Mir-4818-P1 |
Family name |
MIR-4818 (all species) |
Seed |
UUGCACU |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4818-P2
Pfl-Mir-4818-P3
Pfl-Mir-4818-P4
Pfl-Mir-4818-P5
Pfl-Mir-4818-P6
|
Orthologues |
Sko-Mir-4818-P1
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD345931.1: 65685-65745 [-]
|
Precursor (pre-Mir +30nt flank) |
UUGUUUUUGAAGAAAGUGGUUUUAUAGGAAGCUUUACAAGGGAGAGUAGAUUAUGUUACCCUUAUGCUAAUUGCACUCCCUUGUGGGGCUUCCUAUCACCACCAGUACUUCGUAUGCCUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGUUUUUGAAGAAAGU----| UUU A A UGUUAC
GGU AUAGGAAGCUUUACAAGGGAG GUAG UUA C
CCA UAUCCUUCGGGGUGUUCCCUC CGUU AAU C
UUUCCGUAUGCUUCAUGACCA^ C-- A - CGUAUU
. 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pfl-Mir-4818-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCUUUACAAGGGAGAGUAGAUUA -23
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|
Mature sequence |
Pfl-Mir-4818-P1_3p |
mirBase accession | None |
Sequence |
39- AUUGCACUCCCUUGUGGGGCUU -61
Get sequence
|