MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-4818-P6

Family name MIR-4818 (all species)
Seed AUUGCAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-4818-P1  Pfl-Mir-4818-P2  Pfl-Mir-4818-P3  Pfl-Mir-4818-P4  Pfl-Mir-4818-P5 
Orthologues Sko-Mir-4818-P6 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Pfl)
LD345931.1: 60006-60068 [-]
Precursor
(pre-Mir +30nt flank)
GUUAAACUGCAAGUAUUGCAUGUCAUGUAACCUUGCUAUCAUAUGCAAAGAGUGUGUGUCUACAAGGGUCUCAUUGCACAUGAUAGUGGGGCUACAUGUUAUUGUACUGACGGCAAUGUAUCA
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Structure
        10         20         30        40        50        60 
GUUAAACUGCAAGUAUU-   UGU-|     A   UG       A     A   UGUGUGUC 
                  GCA    CAUGUA CCU  CUAUCAU UGCAA GAG        \
                  UGU    GUACAU GGG  GAUAGUA ACGUU CUC        U
ACUAUGUAACGGCAGUCA   UAUU^     C   GU       C     A   UGGGAACA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Pfl-Mir-4818-P6_5p* (predicted)

mirBase accessionNone
Sequence
0- CCUUGCUAUCAUAUGCAAAGAG -22
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Mature sequence

Pfl-Mir-4818-P6_3p

mirBase accessionNone
Sequence
41- CAUUGCACAUGAUAGUGGGGCU -63
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