MirGeneDB ID | Pfl-Mir-4818-P6 |
Family name |
MIR-4818 (all species) |
Seed |
AUUGCAC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-4818-P1
Pfl-Mir-4818-P2
Pfl-Mir-4818-P3
Pfl-Mir-4818-P4
Pfl-Mir-4818-P5
|
Orthologues |
Sko-Mir-4818-P6
|
Node of Origin (locus) |
Enteropneusta
|
Node of Origin (family) |
Enteropneusta
|
Genome context (Pfl) |
LD345931.1: 60006-60068 [-]
|
Precursor (pre-Mir +30nt flank) |
GUUAAACUGCAAGUAUUGCAUGUCAUGUAACCUUGCUAUCAUAUGCAAAGAGUGUGUGUCUACAAGGGUCUCAUUGCACAUGAUAGUGGGGCUACAUGUUAUUGUACUGACGGCAAUGUAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUAAACUGCAAGUAUU- UGU-| A UG A A UGUGUGUC
GCA CAUGUA CCU CUAUCAU UGCAA GAG \
UGU GUACAU GGG GAUAGUA ACGUU CUC U
ACUAUGUAACGGCAGUCA UAUU^ C GU C A UGGGAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pfl-Mir-4818-P6_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCUUGCUAUCAUAUGCAAAGAG -22
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|
Mature sequence |
Pfl-Mir-4818-P6_3p |
mirBase accession | None |
Sequence |
41- CAUUGCACAUGAUAGUGGGGCU -63
Get sequence
|