MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-4818-P6

Family name MIR-4818 (all species)
Seed AUUGCAC
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4818f
Paralogues Sko-Mir-4818-P1  Sko-Mir-4818-P2  Sko-Mir-4818-P3  Sko-Mir-4818-P4  Sko-Mir-4818-P5  Sko-Mir-4818-P7 
Orthologues Pfl-Mir-4818-P6 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)		 NW_003137342.1: 63315-63374 [-]
Clustered miRNAs
(< 50kb from Mir-4818-P6)		 Mir-4818-P6 NW_003137342.1: 63315-63374 [-]
Mir-4818-P5 NW_003137342.1: 63417-63475 [-]
Mir-4818-P4 NW_003137342.1: 64360-64419 [-]
Mir-4818-P3 NW_003137342.1: 64550-64608 [-]
Mir-4818-P2 NW_003137342.1: 64676-64736 [-]
Mir-4818-P1 NW_003137342.1: 65108-65168 [-]
Mir-4818-P7 NW_003137342.1: 65488-65546 [-]
Precursor
(pre-Mir +30nt flank)
CAUAUCAUCGCUUCAGUACACAGUGUGUAUCCUUGGUAUCAUGUGCAUAUAGGUUUAAUAAGUGAUCCCAUUGCACAUGAUAGUGGGGCUACAAGCUGUGGCAAUACUGCUUUCCAUGCU
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Structure
        10          20        30        40        50         
CAUAUCAUCGCUUCAGUA--|     G    U     G           UAUAGGUUUAA 
                    CACAGU UGUA CCUUG UAUCAUGUGCA           U
                    GUGUCG ACAU GGGGU AUAGUACACGU           A
UCGUACCUUUCGUCAUAACG^     A    C     G           UACCCUAGUGA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Sko-Mir-4818-P6_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCUUGGUAUCAUGUGCAUAUAG -22
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Mature sequence

Sko-Mir-4818-P6_3p
mirBase accessionMIMAT0020016
Sequence 
38- CAUUGCACAUGAUAGUGGGGCU -60
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