MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-4818-P1

Family name MIR-4818 (all species)
Seed UUGCACU
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4818a
Paralogues Sko-Mir-4818-P2  Sko-Mir-4818-P3  Sko-Mir-4818-P4  Sko-Mir-4818-P5  Sko-Mir-4818-P6  Sko-Mir-4818-P7 
Orthologues Pfl-Mir-4818-P1 
Node of Origin (locus) Enteropneusta
Node of Origin (family) Enteropneusta
Genome context
(Skow_1.1)
NW_003137342.1: 65108-65168 [-]
Clustered miRNAs
(< 50kb from Mir-4818-P1)
Mir-4818-P6 NW_003137342.1: 63315-63374 [-]
Mir-4818-P5 NW_003137342.1: 63417-63475 [-]
Mir-4818-P4 NW_003137342.1: 64360-64419 [-]
Mir-4818-P3 NW_003137342.1: 64550-64608 [-]
Mir-4818-P2 NW_003137342.1: 64676-64736 [-]
Mir-4818-P1 NW_003137342.1: 65108-65168 [-]
Mir-4818-P7 NW_003137342.1: 65488-65546 [-]
Precursor
(pre-Mir +30nt flank)
GGUGUCCCAAAUAACAUCUGUUGGGUGGACCCUCUCAAUGGAGAGUAAAUUGGCAAUUGUCGACAUCUAAUUGCACUUCAUUGUGGGGCUUCAAACUAUCAUAUUGAGUCUUCAGCAGCAG
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Structure
        10          20         30        40        50          
GGUGUCCCAAAUAACAUC--  U   G-|   C    U        A    A   GCAAUUG 
                    UG UGG  UGGA CCUC CAAUGGAG GUAA UUG       \
                    AC AUC  ACUU GGGG GUUACUUC CGUU AAU       U
GACGACGACUUCUGAGUUAU  U   AA^   C    U        A    -   CUACAGC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Sko-Mir-4818-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- CCUCUCAAUGGAGAGUAAAUUG -22
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Mature sequence

Sko-Mir-4818-P1_3p

mirBase accessionMIMAT0020009
Sequence
39- AUUGCACUUCAUUGUGGGGCUU -61
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