MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-130-P1o3

Family name MIR-130 (all species)
Seed AGUGCAA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-130c
Paralogues Pma-Mir-130-P1o1  Pma-Mir-130-P1o2  Pma-Mir-130-P2o1  Pma-Mir-130-P2o2  Pma-Mir-130-P4o1  Pma-Mir-130-P4o3 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NW_022638183.1: 735210-735270 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1o3)		 Mir-130-P1o3 NW_022638183.1: 735210-735270 [+] UCSC Ensembl
Mir-130-P4o3 NW_022638183.1: 736525-736588 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUGAGCGACACCUUUUCCCCCGUCGCUCGCUUUUUUACUGUUGCACUCCUGUUGGAUGACGAUGAGCAGUGCAACAUAUAAAAGGGCACGCGGCGGCGGGAGACAGCGGCCAGCGGCUG
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Structure
        10         20         30        40         50         
GGGUGAGCGACACCUUU-    -       UC         C-|        C  GUUGGA 
                  UCCC CCGUCGC  GCUUUUUUA  UGUUGCACU CU      U
                  AGGG GGCGGCG  CGGGAAAAU  ACAACGUGA GA      G
GUCGGCGACCGGCGACAG    C       CA         AU^        C  GUAGCA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a single snp between the assembled genome and the miRBase entry.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-130-P1o3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCUUUUUUACUGUUGCACUCCU -22
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Mature sequence

Pma-Mir-130-P1o3_3p
mirBase accessionMIMAT0019457
Sequence 
38- CAGUGCAACAUAUAAAAGGGCAC -61
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