Mir-130-P4o1

MirGeneDB ID

Pma-Mir-130-P4o1

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-130d

Paralogues

Pma-Mir-130-P1o1 Pma-Mir-130-P1o2 Pma-Mir-130-P1o3 Pma-Mir-130-P2o1 Pma-Mir-130-P2o2 Pma-Mir-130-P4o3

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046073.1: 9819109-9819168 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P4o1)

Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCAACGUCGAGCGCGACGGACGACCCGAUGCCCUUUCAACGUCGCACCGCUGUGAGCAGAGCGAGCAGUGCAAUGUUGAAAAAGGGCAUCGGUUCGGUUCGGCAGCAUCGUCGACGCGU

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Structure

        10         20         30          40        50        
UCCAACGUCGAGCGCGA-    -   C          --|       C    C   GUGAG 
                  CGGA CGA CCGAUGCCCU  UUCAACGU GCAC GCU     C
                  GCUU GCU GGCUACGGGA  AAGUUGUA CGUG CGA     A
UGCGCAGCUGCUACGACG    G   U          AA^       A    A   GCGAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-130-P4o1_5p* (predicted)

mirBase accession

None

Sequence

0- GCCCUUUCAACGUCGCACCGCU -22

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Mature sequence

Pma-Mir-130-P4o1_3p

mirBase accession

MIMAT0019452

Sequence

36- CAGUGCAAUGUUGAAAAAGGGCAU -60

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