Mir-130-P2o1

MirGeneDB ID

Pma-Mir-130-P2o1

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-301b

Paralogues

Pma-Mir-130-P1o1 Pma-Mir-130-P1o2 Pma-Mir-130-P1o3 Pma-Mir-130-P2o2 Pma-Mir-130-P4o1 Pma-Mir-130-P4o3

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046073.1: 9811592-9811655 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2o1)

Mir-130-P1o1 NC_046073.1: 9804247-9804309 [+] UCSC Ensembl
Mir-130-P2o1 NC_046073.1: 9811592-9811655 [+] UCSC Ensembl
Mir-130-P4o1 NC_046073.1: 9819109-9819168 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCCCUGACCCGGCCGGCUGCCAGCAGACGCUCUGACAGCGUUGCACUACUGUGCAGCCUGCAGCAAGCAGUGCAAUAGCAUUGUCAAAGCAUCUGAGGGCAGCGCUGCUCACUCGUUCCCUU

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Structure

        10          20        30          40         50          
GACCCCUGACCCGGCCG--      AG    C   C     --  -|       A  GUGCAGC 
                   GCUGCC  CAGA GCU UGACA  GC GUUGCACU CU       \
                   CGACGG  GUCU CGA ACUGU  CG UAACGUGA GA       C
UUCCCUUGCUCACUCGUCG      GA    A   A     UA  A^       C  ACGACGU 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-130-P2o1_5p*

mirBase accession

None

Sequence

0- GCUCUGACAGCGUUGCACUACU -22

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Mature sequence

Pma-Mir-130-P2o1_3p

mirBase accession

MIMAT0019537

Sequence

39- CAGUGCAAUAGCAUUGUCAAAGCAU -64

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