MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-124-P32

Family name MIR-124 (all species)
Seed AAGGCAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-124b
Paralogues Sme-Mir-124-P29  Sme-Mir-124-P30  Sme-Mir-124-P31a  Sme-Mir-124-P31b  Sme-Mir-124-P33  Sme-Mir-124-P34 
Orthologues Aae-Mir-124  Aga-Mir-124  Agr-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lhy-Mir-124  Llo-Mir-124  Mgi-Mir-124  Mom-Mir-124  Npo-Mir-124  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spu-Mir-124  Sro-Mir-124  Tca-Mir-124  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000043_dd_Smes_g4_43: 867921-867975 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGAUUAAAACAAGUAUCCAUGAAAAUUUGCAUUUACAACGUGUCUUUAGUUCAUGUGACACUAAGGCACGCGGUGAAUGCUGAAUUAAAUGGUUUAUCAUUUUAAAAUGUUAC
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Structure
        10           20        30         40        50       
AGUGAUUAAAACAAGUAU---|   GAA     -        AA        U   UCAU 
                     CCAU   AAUUU GCAUUUAC  CGUGUCUU AGU    \
                     GGUA   UUAAG CGUAAGUG  GCACGGAA UCA    G
CAUUGUAAAAUUUUACUAUUU^   AA-     U        GC        -   CAGU 
   110       100        90         80        70         60
Deep sequencing
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CommentThere are Drosha cuts -1, +1 and +2 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-124-P32_5p*
mirBase accessionMIMAT0012113
Sequence 
0- GCAUUUACAACGUGUCUUUAGU -22
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Mature sequence

Sme-Mir-124-P32_3p
mirBase accessionMIMAT0003993
Sequence 
33- UAAGGCACGCGGUGAAUGCUGA -55
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