MirGeneDB ID | Sme-Mir-124-P34 |
Family name |
MIR-124 (all species) |
Seed |
AAGGCAC |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-124c-2
|
Paralogues |
Sme-Mir-124-P31a
Sme-Mir-124-P31b
Sme-Mir-124-P32
Sme-Mir-124-P33
Sme-Mir-124-P35
Sme-Mir-124-P36
|
Orthologues |
Aae-Mir-124
Asu-Mir-124
Bfl-Mir-124
Bge-Mir-124
Bla-Mir-124
Cel-Mir-124
Cte-Mir-124
Dan-Mir-124
Dma-Mir-124
Dme-Mir-124
Dmo-Mir-124
Dpu-Mir-124
Dsi-Mir-124
Dya-Mir-124
Esc-Mir-124
Hme-Mir-124
Isc-Mir-124
Lan-Mir-124
Npo-Mir-124
Obi-Mir-124
Ovu-Mir-124
Pfl-Mir-124
Pmi-Mir-124
Sko-Mir-124
Spu-Mir-124
Tca-Mir-124
Xbo-Mir-124
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Bilateria
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000102_dd_Smes_g4_102: 910443-910504 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGAUUGAAAACUCCCAUUAUAUUCAUGAAGCAUUAACCCUGUUGUCUUAGAUAGUUUAUUACAAAACAUUUAAGGCACGCGGUGAAUGCCAUGUGAAAUGGAAAAUCAUCUUUUCAUUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UAGAUUGAAAACUCCCAUUAUA--| AA A C U UAGUUUAU
UUCAUG GCAUU ACC UGU GUCUUAGA \
AAGUGU CGUAA UGG GCA CGGAAUUU U
UUGUUACUUUUCUACUAAAAGGUA^ AC G C - ACAAAACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-124-P34_5p* |
mirBase accession | MIMAT0013778 |
Sequence |
0- GCAUUAACCCUGUUGUCUUAGA -22
Get sequence
|
Mature sequence |
Sme-Mir-124-P34_3p |
mirBase accession | MIMAT0003995 |
Sequence |
41- UAAGGCACGCGGUGAAUGCCA -62
Get sequence
|