Mir-142-P2a-v1

MirGeneDB ID

Xtr-Mir-142-P2a-v1

Family name

MIR-142 (all species)

Seed

AUAAAGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-142-1

Paralogues

Xtr-Mir-142-P2a-v2 Xtr-Mir-142-P2a-v3 Xtr-Mir-142-P2a-v4 Xtr-Mir-142-P2b-v1 Xtr-Mir-142-P2b-v2 Xtr-Mir-142-P2b-v3 Xtr-Mir-142-P2b-v4

Orthologues

Ami-Mir-142-P2-v1 Ami-Mir-142-P2-v2 Ami-Mir-142-P2-v3 Ami-Mir-142-P2-v4 Bta-Mir-142-P2-v1 Bta-Mir-142-P2-v2 Bta-Mir-142-P2-v3 Bta-Mir-142-P2-v4 Cfa-Mir-142-P2-v1 Cfa-Mir-142-P2-v2 Cfa-Mir-142-P2-v3 Cfa-Mir-142-P2-v4 Cja-Mir-142-P2-v1 Cja-Mir-142-P2-v2 Cja-Mir-142-P2-v3 Cja-Mir-142-P2-v4 Cli-Mir-142-P2-v1 Cli-Mir-142-P2-v2 Cli-Mir-142-P2-v3 Cli-Mir-142-P2-v4 Cmi-Mir-142-P2-v1 Cmi-Mir-142-P2-v2 Cmi-Mir-142-P2-v3 Cmi-Mir-142-P2-v4 Cpi-Mir-142-P2-v1 Cpi-Mir-142-P2-v2 Cpi-Mir-142-P2-v3 Cpi-Mir-142-P2-v4 Cpo-Mir-142-P2-v1 Cpo-Mir-142-P2-v2 Cpo-Mir-142-P2-v3 Cpo-Mir-142-P2-v4 Dno-Mir-142-P2-v1 Dno-Mir-142-P2-v2 Dno-Mir-142-P2-v3 Dno-Mir-142-P2-v4 Dre-Mir-142-P2-v1 Dre-Mir-142-P2-v2 Dre-Mir-142-P2-v3 Dre-Mir-142-P2-v4 Eca-Mir-142-P2-v1 Eca-Mir-142-P2-v2 Eca-Mir-142-P2-v3 Eca-Mir-142-P2-v4 Ete-Mir-142-P2-v1 Ete-Mir-142-P2-v2 Ete-Mir-142-P2-v3 Ete-Mir-142-P2-v4 Gga-Mir-142-P2-v1 Gga-Mir-142-P2-v2 Gga-Mir-142-P2-v3 Gga-Mir-142-P2-v4 Gmo-Mir-142-P2-v1 Gmo-Mir-142-P2-v2 Gmo-Mir-142-P2-v3 Gmo-Mir-142-P2-v4 Hsa-Mir-142-P2-v1 Hsa-Mir-142-P2-v2 Hsa-Mir-142-P2-v3 Hsa-Mir-142-P2-v4 Lch-Mir-142-P2 Loc-Mir-142-P2-v1 Loc-Mir-142-P2-v2 Loc-Mir-142-P2-v3 Loc-Mir-142-P2-v4 Mal-Mir-142-P2-v1 Mal-Mir-142-P2-v2 Mal-Mir-142-P2-v3 Mal-Mir-142-P2-v4 Mdo-Mir-142-P2-v1 Mdo-Mir-142-P2-v2 Mdo-Mir-142-P2-v3 Mdo-Mir-142-P2-v4 Mml-Mir-142-P2-v1 Mml-Mir-142-P2-v2 Mml-Mir-142-P2-v3 Mml-Mir-142-P2-v4 Mmr-Mir-142-P2-v1 Mmr-Mir-142-P2-v2 Mmr-Mir-142-P2-v3 Mmr-Mir-142-P2-v4 Mmu-Mir-142-P2-v1 Mmu-Mir-142-P2-v2 Mmu-Mir-142-P2-v3 Mmu-Mir-142-P2-v4 Neu-Mir-142-P2-v1 Neu-Mir-142-P2-v2 Neu-Mir-142-P2-v3 Neu-Mir-142-P2-v4 Oan-Mir-142-P2-v1 Oan-Mir-142-P2-v2 Oan-Mir-142-P2-v3 Oan-Mir-142-P2-v4 Ocu-Mir-142-P2-v1 Ocu-Mir-142-P2-v2 Ocu-Mir-142-P2-v3 Ocu-Mir-142-P2-v4 Pab-Mir-142-P2-v1 Pab-Mir-142-P2-v2 Pab-Mir-142-P2-v3 Pab-Mir-142-P2-v4 Rno-Mir-142-P2-v1 Rno-Mir-142-P2-v2 Rno-Mir-142-P2-v3 Rno-Mir-142-P2-v4 Sha-Mir-142-P2-v1 Sha-Mir-142-P2-v2 Sha-Mir-142-P2-v3 Sha-Mir-142-P2-v4 Spt-Mir-142-P2 Sto-Mir-142-P2-v1 Sto-Mir-142-P2-v2 Sto-Mir-142-P2-v3 Sto-Mir-142-P2-v4 Tgu-Mir-142-P2-v1 Tgu-Mir-142-P2-v2 Tgu-Mir-142-P2-v3 Tgu-Mir-142-P2-v4 Tni-Mir-142-P2-v1 Tni-Mir-142-P2-v2 Tni-Mir-142-P2-v3 Tni-Mir-142-P2-v4 Xla-Mir-142-P2a1-v1 Xla-Mir-142-P2a1-v2 Xla-Mir-142-P2a1-v3 Xla-Mir-142-P2a1-v4 Xla-Mir-142-P2a2-v1 Xla-Mir-142-P2a2-v2 Xla-Mir-142-P2a2-v3 Xla-Mir-142-P2a2-v4

Node of Origin (locus)

Xenopus

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr2: 38445593-38445652 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P2a-v1)

Mir-142-P2a-v4 chr2: 38445591-38445654 [+] UCSC Ensembl
Mir-142-P2a-v1 chr2: 38445593-38445652 [+] UCSC Ensembl
Mir-142-P2a-v2 chr2: 38445593-38445652 [+] UCSC Ensembl
Mir-142-P2a-v3 chr2: 38445593-38445652 [+] UCSC Ensembl
Mir-142-P2b-v4 chr2: 38446773-38446836 [+] UCSC Ensembl
Mir-142-P2b-v1 chr2: 38446775-38446834 [+] UCSC Ensembl
Mir-142-P2b-v2 chr2: 38446775-38446834 [+] UCSC Ensembl
Mir-142-P2b-v3 chr2: 38446775-38446834 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGAAACCUGGACAUGCAGUGCAGCCACCCAUAAAGUAGAAAGCACUACUAGACAGGACUGAACGCUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGGGCGCUACGAGACCUCACA

Get precursor sequence

Structure

        10          20        30        40        50         
GGAGAAACCUGGACAUG--|      GC  C           A         UAGACAGG 
                   CAGUGCA  CA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU  GU GGUAUUUCAUC UUUGUGAUG        C
ACACUCCAGAGCAUCGCGG^      GA  A           C         UCGCAAGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-142-P2a-v1_5p

mirBase accession

MIMAT0003602

Sequence

0- CAUAAAGUAGAAAGCACUACU -21

Get sequence

Proposed targets

TargetScanVert: xtr-miR-142-5p

Star sequence

Xtr-Mir-142-P2a-v1_3p*

mirBase accession

MIMAT0003603

Sequence

39- UAGUGUUUCCUACUUUAUGGA -60

Get sequence

Proposed targets

TargetScanVert: xtr-miR-142-3p