MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-87-o29

Family name MIR-87 (all species)
Seed UGAGCAA
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues
Orthologues Eba-Mir-87-o29  Gsp-Mir-87  Mom-Mir-87-o29  Sne-Mir-87  War-Mir-87-o29 
Node of Origin (locus) Aculifera
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000014.1: 11932562-11932622 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCGUCGUGUUGAGUAUUGGCUGCCUGCUGCGCCUGAAAUUUUGGCUCAAACCUGUUUUGCAGUAAAGGUGAGCAAAGUUUCAGGUGUAUCAGUUUGUCAGGUAACCAGCAUGUUUAAGA
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Structure
        10          20        30        40        50        60 
GGUCGUCGUGUUGAGUA--|    UGC   C                G   AA    GUUUU 
                   UUGGC   CUG UGCGCCUGAAAUUUUG CUC  ACCU     G
                   GACUG   GAC AUGUGGACUUUGAAAC GAG  UGGA     C
AGAAUUUGUACGACCAAUG^    UUU   U                -   --    AAUGA 
 .       110       100        90        80           70
Deep sequencing
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CommentIt is unclear if this is Mir-87-P1 or P2 given that one of the paralogues was lost in this group and there are no sequence signatures to recognize one paralogue from the other.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Agr-Mir-87-o29_5p* (predicted)

mirBase accessionNone
Sequence
0- GCGCCUGAAAUUUUGGCUCAAACCU -25
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Mature sequence

Agr-Mir-87-o29_3p

mirBase accessionNone
Sequence
39- GUGAGCAAAGUUUCAGGUGUAU -61
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