| MirGeneDB ID | Mom-Mir-87-o29 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Mossy chiton (Mopalia muscosa) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Agr-Mir-87-o29
Eba-Mir-87-o29
Gsp-Mir-87
Sne-Mir-87
War-Mir-87-o29
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| Node of Origin (locus) |
Aculifera
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom) |
JARFOD010087928.1: 5453-5513 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUUUCCUGAGAAAAAAUUGUUUGUUUGCUGCGCCUGACACUUUGUCUCAAACCUGUGAUUAAAAAAAGGUGAGCAAAGUUUCAGGUGUAUUGAACCUGCAAACUGGACAUCUUCAUUUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGUUUCCUGAGAAAAAA--| UU GC C U AA GUGAU
UUGU GUUU UGCGCCUGA ACUUUG CUC ACCU U
AACG CAAG AUGUGGACU UGAAAC GAG UGGA A
CUUUUACUUCUACAGGUCA^ UC UU U - -- AAAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is unclear if this is Mir-87-P1 or P2 given that one of the paralogues was lost in this group and there are no sequence signatures to recognize one paralogue from the other. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Mom-Mir-87-o29_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GCGCCUGACACUUUGUCUCAAACCU -25
Get sequence
|
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| Mature sequence |
Mom-Mir-87-o29_3p |
| mirBase accession | None |
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| Sequence |
39- GUGAGCAAAGUUUCAGGUGUAU -61
Get sequence
|
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