MirGeneDB 3.0

MirGeneDB ID

Eba-Mir-87-o29

Family name MIR-87 (all species)
Seed UGAGCAA
Species Epimenia (Solenogaster) (Epimenia babai)
MiRBase ID
Paralogues
Orthologues Agr-Mir-87-o29  Gsp-Mir-87  Mom-Mir-87-o29  Sne-Mir-87  War-Mir-87-o29 
Node of Origin (locus) Aculifera
Node of Origin (family) Protostomia
Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia)
WURV02181321.1: 1231-1289 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAGUCGAGUCAAUAAAUCUGUGUCUGGCGUGCCUGAAUCUUUGUCUCAAGCCUGUGAUUAUAAAGGUGAGCAAAGUUUCAGGUGUGUUAGAUGCACGUGCCGUCAUCACCGCGGAAU
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Structure
        10          20        30        40        50        60
CUUAGUCGAGUCAAUAA--| C           UG      U     U   AA    GUGA 
                   AU UGUGUCUGGCG  CCUGAA CUUUG CUC  GCCU    U
                   UG ACGUAGAUUGU  GGACUU GAAAC GAG  UGGA    U
UAAGGCGCCACUACUGCCG^ C           GU      U     -   --    AAUA 
       110       100        90        80         70
Deep sequencing
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CommentIt is unclear if this is Mir-87-P1 or P2 given that one of the paralogues was lost in this group and there are no sequence signatures to recognize one paralogue from the other.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Eba-Mir-87-o29_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGCCUGAAUCUUUGUCUCAAGCCU -25
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Mature sequence

Eba-Mir-87-o29_3p

mirBase accessionNone
Sequence
37- GUGAGCAAAGUUUCAGGUGUGU -59
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