MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-12494

Family name MIR-12494 (all species)
Seed GGCCUAA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues
Orthologues Bla-Mir-12494-P1  Bla-Mir-12494-P2a  Bla-Mir-12494-P2b  Bla-Mir-12494-P3  Bla-Mir-12494-P4  Bla-Mir-12494-P5 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049995.1: 9464332-9464391 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GUUUAGAGAGAAAUCUGGGUUCCUCCAUGAAUCCGUGGUGAUUGUGGCCAUGUUGUUAAUCAGGUAUCAUGGCCUAAUUUCCUCGGAUUUAUGUCAAACCUUUCAUCAACAACAUCAAAU
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Structure
        10           20        30        40        50          
GUUUAGAGAGAAAUCUG---|   CCUC          U  U     U       UUGUUAA 
                    GGUU    CAUGAAUCCG GG GAUUG GGCCAUG       \
                    CCAA    GUAUUUAGGC CC UUAAU CCGGUAC       U
UAAACUACAACAACUACUUU^   ACU-          U  U     -       UAUGGAC 
.       110       100         90        80         70
Deep sequencing
CommentThere are numerous paralogues of this gene family in B. floridae but because of the shallowing 454 sequencing no reads are detected for any loci. Thus annotation of this family awaits deeper small RNA sequencing.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-12494_5p* (predicted)

mirBase accessionNone
Sequence
0- AUCCGUGGUGAUUGUGGCCAUG -22
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Mature sequence

Bfl-Mir-12494_3p (predicted)

mirBase accessionNone
Sequence
39- UGGCCUAAUUUCCUCGGAUUU -60
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