| MirGeneDB ID | Bla-Mir-12494-P3 |
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| Family name |
MIR-12494 (all species) |
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| Seed |
UACGGGA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12494-P1
Bla-Mir-12494-P2a
Bla-Mir-12494-P2b
Bla-Mir-12494-P4
Bla-Mir-12494-P5
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| Orthologues |
Bfl-Mir-12494
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| Node of Origin (locus) |
B. lanceolatum
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000025: 2401083-2401144 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCACCUUGAUUUGGUUUGGUUUAGAUGGCGAUACGGGACUAUUAAGGACAUGAUUCCCUUCCAUAUUUUCAUGUUCUUAUAAUCUCGCAUCUCUGUUUGAACAUUCAAGCACCAAAUCAUAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCACCUUGAUUUGGUUUG--| C A C U UUCCCUU
GUUUAGAUGG GAU CGGGA UAU AAGGACAUGA \
CAAGUUUGUC CUA GCUCU AUA UUCUUGUACU C
GAUACUAAACCACGAACUUA^ U C A - UUUAUAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Bla-Mir-12494-P3_5p |
| mirBase accession | None |
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| Sequence |
0- AUACGGGACUAUUAAGGACAUGA -23
Get sequence
|
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| Star sequence |
Bla-Mir-12494-P3_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
40- AUGUUCUUAUAAUCUCGCAUCU -62
Get sequence
|
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