MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-12494-P3

Family name MIR-12494 (all species)
Seed UACGGGA
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12494-P1  Bla-Mir-12494-P2a  Bla-Mir-12494-P2b  Bla-Mir-12494-P4  Bla-Mir-12494-P5 
Orthologues Bfl-Mir-12494 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000025: 2401083-2401144 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACCUUGAUUUGGUUUGGUUUAGAUGGCGAUACGGGACUAUUAAGGACAUGAUUCCCUUCCAUAUUUUCAUGUUCUUAUAAUCUCGCAUCUCUGUUUGAACAUUCAAGCACCAAAUCAUAG
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Structure
        10          20        30        40        50        60 
UCACCUUGAUUUGGUUUG--|         C   A     C   U          UUCCCUU 
                    GUUUAGAUGG GAU CGGGA UAU AAGGACAUGA       \
                    CAAGUUUGUC CUA GCUCU AUA UUCUUGUACU       C
GAUACUAAACCACGAACUUA^         U   C     A   -          UUUAUAC 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Bla-Mir-12494-P3_5p

mirBase accessionNone
Sequence
0- AUACGGGACUAUUAAGGACAUGA -23
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Star sequence

Bla-Mir-12494-P3_3p* (predicted)

mirBase accessionNone
Sequence
40- AUGUUCUUAUAAUCUCGCAUCU -62
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