| MirGeneDB ID | Bla-Mir-12494-P2a |
|---|
| Family name |
MIR-12494 (all species) |
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| Seed |
GGCCUAG |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12494-P1
Bla-Mir-12494-P2b
Bla-Mir-12494-P3
Bla-Mir-12494-P4
Bla-Mir-12494-P5
|
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| Orthologues |
Bfl-Mir-12494
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| Node of Origin (locus) |
B. lanceolatum
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000025: 2400930-2400989 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUACGAGAGAAAUCUGGGUUACUACAUGAAUCCGUGGUGAUUAUGGCCAUGUUGUUUAUCAGGUCUCAUGGCCUAGUUUCCUCGGAUUCCUGUUGAACCUUUCGUCAGCGACAUCGAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUACGAGAGAAAUCUG---| ACU U U U U UUGUUUA
GGUU ACA GAAUCCG GG GAUUA GGCCAUG \
CCAA UGU CUUAGGC CC UUGAU CCGGUAC U
UUAGCUACAGCGACUGCUUU^ GU- C U U - UCUGGAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-12494-P2a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUCCGUGGUGAUUAUGGCCAUG -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-12494-P2a_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGGCCUAGUUUCCUCGGAUUC -60
Get sequence
|
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