MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-12494-P4

Family name MIR-12494 (all species)
Seed GGCCUAA
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12494-P1  Bla-Mir-12494-P2a  Bla-Mir-12494-P2b  Bla-Mir-12494-P3  Bla-Mir-12494-P5 
Orthologues Bfl-Mir-12494 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000025: 2401442-2401501 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUAGACAGAAAUCUGGGUUACUACAUGAAUCCGUGGUGAUUACGGCCAUGUUGUUAAUCAGGUCUCAUGGCCUAAUUUCCUCGGAUUUCUGUUGAAACUUUUGUCAACAACAUUCUAA
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Structure
        10          20        30        40        50          
GGUUAGACAGAAAUCUG--|   ACU   U       U  U     C       UUGUUAA 
                   GGUU   ACA GAAUCCG GG GAUUA GGCCAUG       \
                   UCAA   UGU UUUAGGC CC UUAAU CCGGUAC       U
AAUCUUACAACAACUGUUU^   AGU   C       U  U     -       UCUGGAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-12494-P4_5p*

mirBase accessionNone
Sequence
0- AUCCGUGGUGAUUACGGCCAUG -22
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Mature sequence

Bla-Mir-12494-P4_3p

mirBase accessionNone
Sequence
39- UGGCCUAAUUUCCUCGGAUUU -60
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