| MirGeneDB ID | Bla-Mir-12494-P4 |
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| Family name |
MIR-12494 (all species) |
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| Seed |
GGCCUAA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12494-P1
Bla-Mir-12494-P2a
Bla-Mir-12494-P2b
Bla-Mir-12494-P3
Bla-Mir-12494-P5
|
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| Orthologues |
Bfl-Mir-12494
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| Node of Origin (locus) |
B. lanceolatum
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000025: 2401442-2401501 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGUUAGACAGAAAUCUGGGUUACUACAUGAAUCCGUGGUGAUUACGGCCAUGUUGUUAAUCAGGUCUCAUGGCCUAAUUUCCUCGGAUUUCUGUUGAAACUUUUGUCAACAACAUUCUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUAGACAGAAAUCUG--| ACU U U U C UUGUUAA
GGUU ACA GAAUCCG GG GAUUA GGCCAUG \
UCAA UGU UUUAGGC CC UUAAU CCGGUAC U
AAUCUUACAACAACUGUUU^ AGU C U U - UCUGGAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Bla-Mir-12494-P4_5p* |
| mirBase accession | None |
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| Sequence |
0- AUCCGUGGUGAUUACGGCCAUG -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-12494-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGGCCUAAUUUCCUCGGAUUU -60
Get sequence
|
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