| MirGeneDB ID | Bla-Mir-12494-P5 |
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| Family name |
MIR-12494 (all species) |
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| Seed |
UCCGGGA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
Bla-Mir-12494-P1
Bla-Mir-12494-P2a
Bla-Mir-12494-P2b
Bla-Mir-12494-P3
Bla-Mir-12494-P4
|
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| Orthologues |
Bfl-Mir-12494
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| Node of Origin (locus) |
B. lanceolatum
|
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000025: 2402035-2402096 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGACAAACCUUCAUUUGGUUUAAAUGGUGAUCCGGGAUUAUUAAGAACAUGAUUUCAUUCUAUAUUUUCAUGUUCUUAUAAUCUCGAAUCUCUGUUCAAACAGUCAAGCAUAAAGAAAUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAGACAAACCUUCAUUUG--| A U C U UUUCAUU
GUUU AAUGG GAU CGGGAUUAU AAGAACAUGA \
CAAA UUGUC CUA GCUCUAAUA UUCUUGUACU C
AAUAAAGAAAUACGAACUGA^ C U A - UUUAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-12494-P5_5p |
| mirBase accession | None |
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| Sequence |
0- AUCCGGGAUUAUUAAGAACAUGA -23
Get sequence
|
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| Star sequence |
Bla-Mir-12494-P5_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- AUGUUCUUAUAAUCUCGAAUCU -62
Get sequence
|
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