| MirGeneDB ID | Bta-Mir-1301 |
|---|
| Family name |
MIR-1301 (all species) |
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| Seed |
UGCAGCU |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-1301
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| Paralogues |
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| Orthologues |
Cfa-Mir-1301
Cja-Mir-1301
Cpo-Mir-1301
Dno-Mir-1301
Eca-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
Pab-Mir-1301
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037338.1: 73985200-73985257 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGCGACCCCUAGAGUGGGGGUUGUGGGGGGUCACUCUAGGCCCCGCAGCACUGUGCUGGAUGUUGCAGCUGCCUAGGAGUGAUUUCACACAGUCCUCUCGGCCUCAAGGGUCGCCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAGCGACCCCUAGAGU-- GU G GG - CCC-| CUGU
GGGG UGUG G GUCACU CUAGGC GCAGCA G
CUCC ACAC C UAGUGA GAUCCG CGUUGU C
CCCGCUGGGAACUCCGGCU UG A UU G UCGA^ AGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-1301_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUCACUCUAGGCCCCGCAGCA -22
Get sequence
|
|---|
| Mature sequence |
Bta-Mir-1301_3p |
| mirBase accession | MIMAT0009958 |
|---|
| Sequence |
34- UUGCAGCUGCCUAGGAGUGAUUUC -58
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-1301
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