| MirGeneDB ID | Pab-Mir-1301 |
|---|
| Family name |
MIR-1301 (all species) |
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| Seed |
UGCAGCU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1301
Cfa-Mir-1301
Cja-Mir-1301
Cpo-Mir-1301
Dno-Mir-1301
Eca-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054691.2: 107457658-107457717 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGCGACCCCUAGAAUGGGGAUUGUGGGGGGUCGCUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACAGUCCUCUCUGCCUCCAGGGUCACCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAGCGACCCCUAGAAU-- G - CC-| CUGUG
GGGGAUUGUG GGGGUCGCU CUAGGCA GCAGCA C
CUCCUGACAC CUUCAGUGA GGUCCGU CGUUGU U
CCCACUGGGACCUCCGUCU A G CGA^ AGGGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-1301_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUCGCUCUAGGCACCGCAGCA -22
Get sequence
|
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| Mature sequence |
Pab-Mir-1301_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UUGCAGCUGCCUGGGAGUGACUUC -60
Get sequence
|
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