MirGeneDB ID | Pab-Mir-1301 |
---|---|
Family name | MIR-1301 (all species) |
Seed | UGCAGCU |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-1301 Cfa-Mir-1301 Cja-Mir-1301 Cpo-Mir-1301 Dno-Mir-1301 Eca-Mir-1301 Ete-Mir-1301 Hsa-Mir-1301 Mml-Mir-1301 Mmr-Mir-1301 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054691.2: 107457658-107457717 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAAGCGACCCCUAGAAUGGGGAUUGUGGGGGGUCGCUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACAGUCCUCUCUGCCUCCAGGGUCACCCGet precursor sequence |
Structure | 10 20 30 40 50 CAAGCGACCCCUAGAAU-- G - CC-| CUGUG GGGGAUUGUG GGGGUCGCU CUAGGCA GCAGCA C CUCCUGACAC CUUCAGUGA GGUCCGU CGUUGU U CCCACUGGGACCUCCGUCU A G CGA^ AGGGG . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Pab-Mir-1301_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUCGCUCUAGGCACCGCAGCA -22
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|
Mature sequence | Pab-Mir-1301_3p |
mirBase accession | None |
Sequence |
36- UUGCAGCUGCCUGGGAGUGACUUC -60
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