MirGeneDB ID | Ete-Mir-1301 |
Family name |
MIR-1301 (all species) |
Seed |
UGCAGCU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1301
Cfa-Mir-1301
Cja-Mir-1301
Cpo-Mir-1301
Dno-Mir-1301
Eca-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
Pab-Mir-1301
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980293: 22580093-22580152 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGGCGACCCCUGGAAUGGGGAUUGUGGGGGGUCACUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGAUUCCACACAGUCCUCUCUGCCUCCAGGGUCACCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGCGACCCCUGGAAU-- G - CC-| CUGUG
GGGGAUUGUG GGGGUCACU CUAGGCA GCAGCA C
CUCCUGACAC CCUUAGUGA GGUCCGU CGUUGU U
CCCACUGGGACCUCCGUCU A G CGA^ AGGGG
. 110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-1301_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUCACUCUAGGCACCGCAGCA -22
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|
Mature sequence |
Ete-Mir-1301_3p |
mirBase accession | None |
Sequence |
36- UUGCAGCUGCCUGGGAGUGAUUCC -60
Get sequence
|