| MirGeneDB ID | Eca-Mir-1301 |
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| Family name |
MIR-1301 (all species) |
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| Seed |
UGCAGCU |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-1301
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| Paralogues |
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| Orthologues |
Bta-Mir-1301
Cfa-Mir-1301
Cja-Mir-1301
Cpo-Mir-1301
Dno-Mir-1301
Ete-Mir-1301
Hsa-Mir-1301
Mml-Mir-1301
Mmr-Mir-1301
Pab-Mir-1301
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009162.1: 71646917-71646976 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGUGACCCCUAGAAUGGGGGCUGUGGGGGGUCACUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGAUUUCACACAGUCCUCUCUGCCUCAAGGGUCACCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAGUGACCCCUAGAAU-- G GG - CC-| CUGUG
GGGGGCUGUG G GUCACU CUAGGCA GCAGCA C
CUCCUGACAC C UAGUGA GGUCCGU CGUUGU U
CCCACUGGGAACUCCGUCU A UU G CGA^ AGGGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-1301_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUCACUCUAGGCACCGCAGCA -22
Get sequence
|
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| Mature sequence |
Eca-Mir-1301_3p |
| mirBase accession | MIMAT0013070 |
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| Sequence |
36- UUGCAGCUGCCUGGGAGUGAUUUC -60
Get sequence
|
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