| MirGeneDB ID | Cja-Mir-1301 |
|---|---|
| Family name | MIR-1301 (all species) |
| Seed | UGCAGCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1301 Cfa-Mir-1301 Cpo-Mir-1301 Dno-Mir-1301 Eca-Mir-1301 Ete-Mir-1301 Hsa-Mir-1301 Mml-Mir-1301 Mmr-Mir-1301 Pab-Mir-1301 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021928.1: 87839498-87839557 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAAGCGACCCCUAGAAUGGGGAUUGUGGGGGGUCGCUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACAGUCCUCUCUGCCUCCAGGGUCACCCGet precursor sequence |
| Structure | 10 20 30 40 50 CAAGCGACCCCUAGAAU-- G - CC-| CUGUG GGGGAUUGUG GGGGUCGCU CUAGGCA GCAGCA C CUCCUGACAC CUUCAGUGA GGUCCGU CGUUGU U CCCACUGGGACCUCCGUCU A G CGA^ AGGGG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-1301_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGUCGCUCUAGGCACCGCAGCA -22
Get sequence
|
| Mature sequence | Cja-Mir-1301_3p |
| mirBase accession | None |
| Sequence |
36- UUGCAGCUGCCUGGGAGUGACUUC -60
Get sequence
|
