MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-1301

Family name MIR-1301 (all species)
Seed UGCAGCU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1301  Cfa-Mir-1301  Cpo-Mir-1301  Dno-Mir-1301  Eca-Mir-1301  Ete-Mir-1301  Hsa-Mir-1301  Mml-Mir-1301  Mmr-Mir-1301  Pab-Mir-1301 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021928.1: 87839498-87839557 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCGACCCCUAGAAUGGGGAUUGUGGGGGGUCGCUCUAGGCACCGCAGCACUGUGCUGGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACAGUCCUCUCUGCCUCCAGGGUCACCC
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Structure
        10          20        30         40         50        
CAAGCGACCCCUAGAAU--          G         -       CC-|     CUGUG 
                   GGGGAUUGUG GGGGUCGCU CUAGGCA   GCAGCA     C
                   CUCCUGACAC CUUCAGUGA GGUCCGU   CGUUGU     U
CCCACUGGGACCUCCGUCU          A         G       CGA^     AGGGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-1301_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGCUCUAGGCACCGCAGCA -22
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Mature sequence

Cja-Mir-1301_3p
mirBase accessionNone
Sequence 
36- UUGCAGCUGCCUGGGAGUGACUUC -60
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