MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-1301

Family name MIR-1301 (all species)
Seed UGCAGCU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-1301
Paralogues
Orthologues Bta-Mir-1301  Cja-Mir-1301  Cpo-Mir-1301  Dno-Mir-1301  Eca-Mir-1301  Ete-Mir-1301  Hsa-Mir-1301  Mml-Mir-1301  Mmr-Mir-1301  Pab-Mir-1301 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr17: 19575834-19575893 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAGCGACCCCUAGAAUGGGGCUUGUGGGGGGUCACUCUGGGCACCGCAACACUGUGCUAGGGAUGUUGCAGCUGCCUGGGAGUGACUUCACACAGUCCUCUCUGCCUCAAGGGUCACCC
Get precursor sequence
Structure
        10          20        30         40         50        
UAAGCGACCCCUAGAAU--    C     G         - UG    CC-|     CUGUG 
                   GGGG UUGUG GGGGUCACU C  GGCA   GCAACA     C
                   CUCC GACAC CUUCAGUGA G  CCGU   CGUUGU     U
CCCACUGGGAACUCCGUCU    U     A         G GU    CGA^     AGGGA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-1301_5p*

mirBase accessionNone
Sequence
0- GGUCACUCUGGGCACCGCAACA -22
Get sequence
Mature sequence

Cfa-Mir-1301_3p

mirBase accessionMIMAT0034337
Sequence
36- UUGCAGCUGCCUGGGAGUGACUUC -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-1301
miRDB: MIMAT0034337