MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-1842-v1

Family name MIR-1842 (all species)
Seed UGGCUCU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-1842
Paralogues Cfa-Mir-1842-v2 
Orthologues Bta-Mir-1842-v1  Cpo-Mir-1842-v1  Dno-Mir-1842-v1  Eca-Mir-1842-v1  Mmr-Mir-1842-v1  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr6: 38759034-38759094 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1842-v1)		 Mir-1842-v1 chr6: 38759034-38759094 [+] UCSC Ensembl
Mir-1842-v2 chr6: 38759035-38759094 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGCACCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGCGAGGUCAGCUCAAGGUGGGUCUGGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGCAGCAGGUGC
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Structure
        10          20        30        40        50        60
CCAGCACCUGUGAGGUU--|   GUGC     UUG      CG     A     AGGUGGG 
                   GGUG    UGACG   GCUCUG  AGGUC GCUCA       U
                   CCAC    ACUGU   CGGGAC  UCCGG CGAGU       C
CGUGGACGACGCACGAGGA^   ACCC     UG-      UG     A     UAUAGGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-1842-v1_5p
mirBase accessionMIMAT0006701
Sequence 
0- UUGGCUCUGCGAGGUCAGCUCA -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-1842
miRDB: MIMAT0006701
Star sequence

Cfa-Mir-1842-v1_3p*
mirBase accessionNone
Sequence 
40- AGCAGGCCUGUCAGGGCGUUG -61
Get sequence