MirGeneDB ID | Ocu-Mir-1842 |
Family name |
MIR-1842 (all species) |
Seed |
GGCUCUG |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1842-v1
Bta-Mir-1842-v2
Cfa-Mir-1842-v1
Cfa-Mir-1842-v2
Cpo-Mir-1842-v1
Cpo-Mir-1842-v2
Dno-Mir-1842-v1
Dno-Mir-1842-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chrUn1799: 11050-11111 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGUGCCUGCGAGGUCAGUGGUGCCGACGCUGGCUCUGCGAGGUCAGCUCAGGGUGGGACUGGACAUUGAGCAGGCCUGUCGGGGCGCCUCACCCACACCUUCCUCUUCUGCCGGGGGUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGUGCCUGCGAGGUCA--------| UGCC C UG CG A GGGUGGG
GUGG GA GC GCUCUG AGGUC GCUCA A
CACC CU CG CGGGGC UCCGG CGAGU C
CGGUGGGGGCCGUCUUCUCCUUCCA^ CA-- C -- UG A UACAGGU
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-1842_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGCUCUGCGAGGUCAGCUCA -21
Get sequence
|
Star sequence |
Ocu-Mir-1842_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AGCAGGCCUGUCGGGGCGCCUCA -62
Get sequence
|