MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-1842

Family name MIR-1842 (all species)
Seed GGCUCUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1842-v1  Bta-Mir-1842-v2  Cfa-Mir-1842-v1  Cfa-Mir-1842-v2  Cpo-Mir-1842-v1  Cpo-Mir-1842-v2  Dno-Mir-1842-v1  Dno-Mir-1842-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn1799: 11050-11111 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGUGCCUGCGAGGUCAGUGGUGCCGACGCUGGCUCUGCGAGGUCAGCUCAGGGUGGGACUGGACAUUGAGCAGGCCUGUCGGGGCGCCUCACCCACACCUUCCUCUUCUGCCGGGGGUGGC
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Structure
        10                20        30        40        50         
GCGUGCCUGCGAGGUCA--------|   UGCC  C  UG      CG     A     GGGUGGG 
                         GUGG    GA GC  GCUCUG  AGGUC GCUCA       A
                         CACC    CU CG  CGGGGC  UCCGG CGAGU       C
CGGUGGGGGCCGUCUUCUCCUUCCA^   CA--  C  --      UG     A     UACAGGU 
120       110       100          90          80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-1842_5p (predicted)

mirBase accessionNone
Sequence
0- UGGCUCUGCGAGGUCAGCUCA -21
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Star sequence

Ocu-Mir-1842_3p* (predicted)

mirBase accessionNone
Sequence
39- AGCAGGCCUGUCGGGGCGCCUCA -62
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