MirGeneDB 3.0
MirGeneDB ID

Dno-Mir-1842-v1

Family name MIR-1842 (all species)
Seed UGGCUCU
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-1842
Paralogues Dno-Mir-1842-v2 
Orthologues Bta-Mir-1842-v1  Cfa-Mir-1842-v1  Cpo-Mir-1842-v1  Eca-Mir-1842-v1  Mmr-Mir-1842-v1  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH582338: 68190-68249 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1842-v1)		 Mir-1842-v1 JH582338: 68190-68249 [+] UCSC Ensembl
Mir-1842-v2 JH582338: 68191-68249 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGCGCCGGGAGGCUGGUGGGGUUGACCUUGGCUCUGCGAGGUCGGCUCAAGGUGGGUCUGACGUUGAGCAGGCCUGUCAGGGCAUCGUUACUCACAGCAGGAGCAUGCAGCAGGGCG
Get precursor sequence
Structure
        10            20        30        40        50          
GCCUGCGCCGGGAGGCUG----|    GU    CUUG      CG     G     AGGUGGG 
                      GUGGG  UGAC    GCUCUG  AGGUC GCUCA       \
                      CACUC  AUUG    CGGGAC  UCCGG CGAGU       U
GCGGGACGACGUACGAGGACGA^    --    CUA-      UG     A     UGCAGUC 
.       110       100          90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Dno-Mir-1842-v1_5p
mirBase accessionMIMAT0048051
Sequence 
0- UUGGCUCUGCGAGGUCGGCUCA -22
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Star sequence

Dno-Mir-1842-v1_3p* (predicted)
mirBase accessionMIMAT0048052
Sequence 
39- AGCAGGCCUGUCAGGGCAUCG -60
Get sequence