MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-1842-v2

Family name MIR-1842 (all species)
Seed GGCUCUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-1842
Paralogues Cpo-Mir-1842-v1 
Orthologues Bta-Mir-1842-v2  Cfa-Mir-1842-v2  Dno-Mir-1842-v2  Eca-Mir-1842-v2  Mmr-Mir-1842-v2  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_4: 22299160-22299219 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-1842-v2)		 Mir-1842-v1 scaffold_4: 22299160-22299220 [-] UCSC
Mir-1842-v2 scaffold_4: 22299160-22299219 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCAUGCCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGCGAGGUCGGCUCAAGGUGGGUCUUGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACACAGCAGGUGC
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Structure
        10        20           30        40        50         
CCAUGCCUGUGAGGUUGG     C---|    UUG      CG     G      GGUGGG 
                  UGGUG    UGACG   GCUCUG  AGGUC GCUCAA      U
                  ACCAC    ACUGU   CGGGAC  UCCGG CGAGUU      C
CGUGGACGACACACGAGG     ACCC^    UG-      UG     A      AUAGUU 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-1842-v2_5p
mirBase accessionMIMAT0047427
Sequence 
0- UGGCUCUGCGAGGUCGGCUCAA -22
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Star sequence

Cpo-Mir-1842-v2_3p*
mirBase accessionMIMAT0047428
Sequence 
38- GAGCAGGCCUGUCAGGGCGUUG -60
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