MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-1842-v2

Family name MIR-1842 (all species)
Seed GGCUCUG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-1842
Paralogues Cfa-Mir-1842-v1 
Orthologues Bta-Mir-1842-v2  Cpo-Mir-1842-v2  Dno-Mir-1842-v2  Eca-Mir-1842-v2  Mmr-Mir-1842-v2  Ocu-Mir-1842 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr6: 38759035-38759094 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1842-v2)		 Mir-1842-v1 chr6: 38759034-38759094 [+] UCSC Ensembl
Mir-1842-v2 chr6: 38759035-38759094 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCACCUGUGAGGUUGGUGGUGCUGACGUUGGCUCUGCGAGGUCAGCUCAAGGUGGGUCUGGAUAUUGAGCAGGCCUGUCAGGGCGUUGUCACCCACACCAGGAGCACGCAGCAGGUGC
Get precursor sequence
Structure
        10        20           30        40        50         
CAGCACCUGUGAGGUUGG     C---|    UUG      CG     A      GGUGGG 
                  UGGUG    UGACG   GCUCUG  AGGUC GCUCAA      U
                  ACCAC    ACUGU   CGGGAC  UCCGG CGAGUU      C
CGUGGACGACGCACGAGG     ACCC^    UG-      UG     A      AUAGGU 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-1842-v2_5p
mirBase accessionMIMAT0006701
Sequence 
0- UGGCUCUGCGAGGUCAGCUCAA -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-1842
miRDB: MIMAT0006701
Star sequence

Cfa-Mir-1842-v2_3p*
mirBase accessionNone
Sequence 
38- GAGCAGGCCUGUCAGGGCGUUG -60
Get sequence