MirGeneDB ID | Cfa-Mir-1911 |
Family name |
MIR-1911 (all species) |
Seed |
GAGUACC |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-1911
Cja-Mir-1911
Eca-Mir-1911
Hsa-Mir-1911
Mml-Mir-1911
Mmr-Mir-1911
Ocu-Mir-1911
Pab-Mir-1911
|
Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
|
Genome context (canFam3_add) |
chrX: 87505482-87505540 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUAUCCAUCAUCAUUUGCUGGGCAUCUGCUGAGUACCGCCAUGUCUGUUGGGCGUCCACUAUCUCCCACCAGGCAUUGUGGUCUCUGCUGAUGCUCUGCCAUUUCACCACCAUGAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUAUCCAUCAUCAUUU--| U U U U C U CGUCC
GC GGGCAUC GC GAG ACCGC AUGUCUG UGGG A
CG CUCGUAG CG CUC UGGUG UACGGAC ACCC C
AAGAGUACCACCACUUUAC^ U U U - U C UCUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Mir-1911_5p |
mirBase accession | None |
Sequence |
0- UGAGUACCGCCAUGUCUGUUGGG -23
Get sequence
|
Star sequence |
Cfa-Mir-1911_3p* |
mirBase accession | None |
Sequence |
37- CACCAGGCAUUGUGGUCUCUGC -59
Get sequence
|