| MirGeneDB ID | Pab-Mir-1911 |
|---|
| Family name |
MIR-1911 (all species) |
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| Seed |
GAGUACC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-1911
Cfa-Mir-1911
Cja-Mir-1911
Eca-Mir-1911
Hsa-Mir-1911
Mml-Mir-1911
Mmr-Mir-1911
Ocu-Mir-1911
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 120605512-120605570 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUAUCCAUCAUCAUUUGCUUGGCAUCUGCUGAGUACCGCCAUGUCUGUUGGGCAUCCACAGUUUCCCACCAGGCAUUGUGGUCUCCGCUGACGCUUUGCCAUUUCACCACCGGUGCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUAUCCAUCAUCAUUU--| UU A U U U C U CAUCC
GC GGC UC GC GAG ACCGC AUGUCUG UGGG A
CG UCG AG CG CUC UGGUG UACGGAC ACCC C
UCCGUGGCCACCACUUUAC^ UU C U C - U C UUUGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-1911_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGUACCGCCAUGUCUGUUGGG -23
Get sequence
|
|---|
| Star sequence |
Pab-Mir-1911_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CACCAGGCAUUGUGGUCUCCGC -59
Get sequence
|
|---|
