| MirGeneDB ID | Cja-Mir-1911 |
|---|---|
| Family name | MIR-1911 (all species) |
| Seed | GAGUACC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1911 Cfa-Mir-1911 Eca-Mir-1911 Hsa-Mir-1911 Mml-Mir-1911 Mmr-Mir-1911 Ocu-Mir-1911 Pab-Mir-1911 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 107045408-107045466 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGUAUCCAUCAUCAUUUGCUCAGCAUCUGCUGAGUACCGCCAUGUCUGUUGGGCAUCCACAGUCUCCCACCAGGCAUUGUGGUCUCUGUAGAUGCUUUGCCAUUUCACCACCGGUGCCUGet precursor sequence |
| Structure | 10 20 30 40 50 GGUAUCCAUCAUCAUUU--| UC U U C U CAUCC GC AGCAUCUGC GAG ACCGC AUGUCUG UGGG A CG UCGUAGAUG CUC UGGUG UACGGAC ACCC C UCCGUGGCCACCACUUUAC^ UU U - U C UCUGA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-1911_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGUACCGCCAUGUCUGUUGGG -23
Get sequence
|
| Star sequence | Cja-Mir-1911_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CACCAGGCAUUGUGGUCUCUGU -59
Get sequence
|
