| MirGeneDB ID | Cja-Mir-1911 |
|---|
| Family name |
MIR-1911 (all species) |
|---|
| Seed |
GAGUACC |
|---|
| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-1911
Cfa-Mir-1911
Eca-Mir-1911
Hsa-Mir-1911
Mml-Mir-1911
Mmr-Mir-1911
Ocu-Mir-1911
Pab-Mir-1911
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 107045408-107045466 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUAUCCAUCAUCAUUUGCUCAGCAUCUGCUGAGUACCGCCAUGUCUGUUGGGCAUCCACAGUCUCCCACCAGGCAUUGUGGUCUCUGUAGAUGCUUUGCCAUUUCACCACCGGUGCCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUAUCCAUCAUCAUUU--| UC U U C U CAUCC
GC AGCAUCUGC GAG ACCGC AUGUCUG UGGG A
CG UCGUAGAUG CUC UGGUG UACGGAC ACCC C
UCCGUGGCCACCACUUUAC^ UU U - U C UCUGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
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| Mature sequence |
Cja-Mir-1911_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGUACCGCCAUGUCUGUUGGG -23
Get sequence
|
|---|
| Star sequence |
Cja-Mir-1911_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CACCAGGCAUUGUGGUCUCUGU -59
Get sequence
|
|---|
