MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-1911

Family name MIR-1911 (all species)
Seed GAGUACC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-1911
Paralogues
Orthologues Bta-Mir-1911  Cfa-Mir-1911  Hsa-Mir-1911  Mml-Mir-1911 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrX: 63203067-63203125 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1911)
Mir-1298 chrX: 63168656-63168729 [+] UCSC Ensembl
Mir-1911 chrX: 63203067-63203125 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUAUCCAUCAUCAUUUGCUGGGCAUCUGCUGAGUACCACCAUGUCUGUUGGACAUGCACAGUCUCCCACCAGGCAUUGUGGUCUCUGCCGAUGCUCUGCCAUUUCACCACCAGUACCU
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Structure
        10          20        30        40        50         
GGUAUCCAUCAUCAUUU--| U       U  U   U     C       U   ACAUGC 
                   GC GGGCAUC GC GAG ACCAC AUGUCUG UGG      A
                   CG CUCGUAG CG CUC UGGUG UACGGAC ACC      C
UCCAUGACCACCACUUUAC^ U       C  U   -     U       C   CUCUGA 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-1911_5p

mirBase accessionMIMAT0048601
Sequence
0- UGAGUACCACCAUGUCUGUUGGA -23
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Star sequence

Ocu-Mir-1911_3p*

mirBase accessionMIMAT0048602
Sequence
37- CACCAGGCAUUGUGGUCUCUGC -59
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