MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1911

Family name MIR-1911 (all species)
Seed GAGUACC
Species Horse (Equus caballus)
MiRBase ID eca-mir-1911
Paralogues
Orthologues Bta-Mir-1911  Cfa-Mir-1911  Cja-Mir-1911  Hsa-Mir-1911  Mml-Mir-1911  Mmr-Mir-1911  Ocu-Mir-1911  Pab-Mir-1911 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 94950412-94950470 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1911)		 Mir-1298 CM009179.1: 94904640-94904713 [+] UCSC Ensembl
Mir-1911 CM009179.1: 94950412-94950470 [+] UCSC Ensembl
Mir-448 CM009179.1: 94994786-94994865 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCAUCCAUCAUCAUUCGCUGGGCAUUUGCUGAGUACCGCCAUGUCUGUUGGGCAUCCACAGUCUCCCACCAGCCAUUGUGGUCUCUGCUGGUGCUCUGCCAUUUCACCACCAGUGCCU
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Structure
        10          20        30        40        50         
GGCAUCCAUCAUCAUUC--| U      UU  U   U     C   U   U    CAUCC 
                   GC GGGCAU  GC GAG ACCGC AUG CUG UGGG     A
                   CG CUCGUG  CG CUC UGGUG UAC GAC ACCC     C
UCCGUGACCACCACUUUAC^ U      GU  U   -     U   C   C    UCUGA 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-1911_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGUACCGCCAUGUCUGUUGGG -23
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Star sequence

Eca-Mir-1911_3p* (predicted)
mirBase accessionMIMAT0034704
Sequence 
37- CACCAGCCAUUGUGGUCUCUGC -59
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