Mir-448

MirGeneDB ID

Eca-Mir-448

Family name

MIR-448 (all species)

Seed

UGCAUAU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-448

Paralogues

Orthologues

Bta-Mir-448 Cfa-Mir-448 Cja-Mir-448 Cpo-Mir-448 Ete-Mir-448 Hsa-Mir-448 Laf-Mir-448 Mml-Mir-448 Mmr-Mir-448 Mmu-Mir-448 Ocu-Mir-448 Pab-Mir-448 Rno-Mir-448

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 94994786-94994865 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-448)

Mir-1911 CM009179.1: 94950412-94950470 [+] UCSC Ensembl
Mir-448 CM009179.1: 94994786-94994865 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGUUAACCUUCACAUGGGCGGGGAGGUUGAACAUCCUGCAUAGUGCUGCCAGGAAAUCCCCAUUUUAUACUAAGAGGGGGCUGGCUGGUUGCAUAUGUAGGAUGUCCCAUCUCCCCGCCCGCUUCAUCAGGACAGAUU

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Structure

        10         20        30        40        50        60        70
GCAGUUAACCUUCACAU-|           UGA            G   U   AGGAAAUCCCCAUUUUA 
                  GGGCGGGGAGGU   ACAUCCUGCAUA UGC GCC                 U
                  CCCGCCCCUCUA   UGUAGGAUGUAU ACG UGG                 A
UUAGACAGGACUACUUCG^           CCC            -   U   UCGGUCGGGGGAGAAUC 
.       130       120       110       100         90        80

Deep sequencing

3' NTU

Yes

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-448_5p* (predicted)

mirBase accession

None

Sequence

0- GAACAUCCUGCAUAGUGCUGCC -22

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Mature sequence

Eca-Mir-448_3p

mirBase accession

MIMAT0013218

Sequence

60- UUGCAUAUGUAGGAUGUCCC -80

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