| MirGeneDB ID | Cja-Mir-448 |
|---|---|
| Family name | MIR-448 (all species) |
| Seed | UGCAUAU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-448 Cfa-Mir-448 Cpo-Mir-448 Eca-Mir-448 Ete-Mir-448 Hsa-Mir-448 Laf-Mir-448 Mml-Mir-448 Mmr-Mir-448 Mmu-Mir-448 Ocu-Mir-448 Pab-Mir-448 Rno-Mir-448 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 107095147-107095225 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGUUCACCUUCACAUGGGCGGGGAGGUUGAACAUCCUGCAUAGUGCUGCCAGGAAAUCCCUAUUUCAUACUAAGAGGGGGCUGGCUGGUUGCAUAUGUAGGAUGUCCCAUCUCCCAGCCCACUUCGUCAUGACAGAUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGUUCACCUUCACAUG--| G UGA G U AGGAAAUCCCUAUUUCA GGC GGGAGGU ACAUCCUGCAUA UGC GCC U CCG CCCUCUA UGUAGGAUGUAU ACG UGG A AUAGACAGUACUGCUUCAC^ A CCC - U UCGGUCGGGGGAGAAUC 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-448_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUCCUGCAUAGUGCUGCC -21
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|
| Mature sequence | Cja-Mir-448_3p (predicted) |
| mirBase accession | None |
| Sequence |
59- UUGCAUAUGUAGGAUGUCCC -79
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|
