| MirGeneDB ID | Pab-Mir-448 |
|---|---|
| Family name | MIR-448 (all species) |
| Seed | UGCAUAU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-448 Cfa-Mir-448 Cja-Mir-448 Cpo-Mir-448 Eca-Mir-448 Ete-Mir-448 Hsa-Mir-448 Laf-Mir-448 Mml-Mir-448 Mmr-Mir-448 Mmu-Mir-448 Ocu-Mir-448 Rno-Mir-448 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 120661088-120661166 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAGUUCAUCUUCGCAUGGGCCGGGAGGUUGAACAUCCUGCAUAGUGCUGCCAGGAAAUCCCUAUUUCAUAUAAGAGGGGGCUGGCUGGUUGCAUAUGUAGGAUGUCCCAUCUCCCAGCCCACUUCGUCAUGACAGACAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCAGUUCAUCUUCGCAU-| C UGA G U AGGAAAUCCCUAUUUCA GGGC GGGAGGU ACAUCCUGCAUA UGC GCC \ CCCG CCCUCUA UGUAGGAUGUAU ACG UGG U ACAGACAGUACUGCUUCA^ A CCC - U UCGGUCGGGGGAGAAUA 130 120 110 100 90 80 |
| Deep sequencing | |
| 3' NTU | Yes |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-448_5p* |
| mirBase accession | None |
| Sequence |
0- GAACAUCCUGCAUAGUGCUGCC -22
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|
| Mature sequence | Pab-Mir-448_3p |
| mirBase accession | None |
| Sequence |
59- UUGCAUAUGUAGGAUGUCCC -79
Get sequence
|
