MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-448

Family name MIR-448 (all species)
Seed UGCACAU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-448
Paralogues
Orthologues Bta-Mir-448  Cfa-Mir-448  Cja-Mir-448  Eca-Mir-448  Ete-Mir-448  Hsa-Mir-448  Laf-Mir-448  Mml-Mir-448  Mmr-Mir-448  Mmu-Mir-448  Ocu-Mir-448  Pab-Mir-448  Rno-Mir-448 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_46: 5141152-5141231 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCAUUUGGCUUUCCCAUGGGUGAGGAGGUUGAACAUCCUGCAUGGUGCUGCCACGAAAUCCCUUUGUCAUACUAAGAGGGGACUGGCUGGUUGCACAUGUAGGAUGUCCCAUCUCCUGGCCCACUUCAUCAAGCCAGACA
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Structure
        10         20        30        40        50        60        70
GCAUUUGGCUUUCCCAU-|   G       UGA            G   U   ACGAAAUCCCUUUGUCA 
                  GGGU AGGAGGU   ACAUCCUGCAUG UGC GCC                 U
                  CCCG UCCUCUA   UGUAGGAUGUAC ACG UGG                 A
ACAGACCGAACUACUUCA^   G       CCC            -   U   UCGGUCAGGGGAGAAUC 
.       130       120       110       100         90        80
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-448_5p* (predicted)

mirBase accessionMIMAT0047255
Sequence
0- GAACAUCCUGCAUGGUGCUGCC -22
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Mature sequence

Cpo-Mir-448_3p

mirBase accessionMIMAT0047256
Sequence
60- UUGCACAUGUAGGAUGUCCC -80
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