| MirGeneDB ID | Cpo-Mir-448 |
|---|
| Family name |
MIR-448 (all species) |
|---|
| Seed |
UGCACAU |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-448
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-448
Cfa-Mir-448
Ete-Mir-448
Hsa-Mir-448
Mml-Mir-448
Mmu-Mir-448
Ocu-Mir-448
Rno-Mir-448
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_46: 5141152-5141231 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCAUUUGGCUUUCCCAUGGGUGAGGAGGUUGAACAUCCUGCAUGGUGCUGCCACGAAAUCCCUUUGUCAUACUAAGAGGGGACUGGCUGGUUGCACAUGUAGGAUGUCCCAUCUCCUGGCCCACUUCAUCAAGCCAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
GCAUUUGGCUUUCCCAU-| G UGA G U ACGAAAUCCCUUUGUCA
GGGU AGGAGGU ACAUCCUGCAUG UGC GCC U
CCCG UCCUCUA UGUAGGAUGUAC ACG UGG A
ACAGACCGAACUACUUCA^ G CCC - U UCGGUCAGGGGAGAAUC
. 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpo-Mir-448_5p* (predicted) |
| mirBase accession | MIMAT0047255 |
|---|
| Sequence |
0- GAACAUCCUGCAUGGUGCUGCC -22
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-448_3p |
| mirBase accession | MIMAT0047256 |
|---|
| Sequence |
60- UUGCACAUGUAGGAUGUCCC -80
Get sequence
|
|---|
