MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-1298

Family name MIR-1298 (all species)
Seed UCAUUCG
Species Horse (Equus caballus)
MiRBase ID eca-mir-1298
Paralogues
Orthologues Bta-Mir-1298  Cfa-Mir-1298  Cja-Mir-1298  Cpo-Mir-1298  Ete-Mir-1298  Hsa-Mir-1298  Laf-Mir-1298  Mml-Mir-1298  Mmr-Mir-1298  Mmu-Mir-1298  Ocu-Mir-1298  Pab-Mir-1298  Rno-Mir-1298 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 94904640-94904713 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1298)		 Mir-1298 CM009179.1: 94904640-94904713 [+] UCSC Ensembl
Mir-1911 CM009179.1: 94950412-94950470 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCUAUUGGAAAGAUGAGGAGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCAGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCAUGACUCAACUGGAACCUU
Get precursor sequence
Structure
        10          20        30        40        50        60      
AGAGCUAUUGGAAAGAU--|      U         U    C            UCCAAGUACCCAG 
                   GAGGAGU AAGAGUUCA UCGG UGUCCAGAUGUA             U
                   CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU             U
UUCCAAGGUCAACUCAGUA^      C         U    A            AAAUAACGGUUUA 
  130       120       110       100        90        80        70
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-1298_5p
mirBase accessionMIMAT0013196
Sequence 
0- UUCAUUCGGCUGUCCAGAUGUA -22
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Star sequence

Eca-Mir-1298_3p*
mirBase accessionNone
Sequence 
52- CAUCUGGGCAACUGAUUGAACU -74
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