MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-1298

Family name MIR-1298 (all species)
Seed UCAUUCG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-1298
Paralogues
Orthologues Bta-Mir-1298  Cfa-Mir-1298  Cpo-Mir-1298  Ete-Mir-1298  Hsa-Mir-1298  Mml-Mir-1298  Mmu-Mir-1298  Ocu-Mir-1298 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 118190252-118190325 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGUGUUGGAGAGAUGAGGGGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCUGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUCUCUUGACUCAACUGGAGCACC
Get precursor sequence
Structure
        10          20        30        40        50        60      
AGAAGUGUUGGAGAGAU--|      U         U    C            UCCAAGUACCCUG 
                   GAGGGGU AAGAGUUCA UCGG UGUCCAGAUGUA             U
                   CUCUUCG UUUUCAAGU AGUC ACGGGUCUACAU             U
CCACGAGGUCAACUCAGUU^      C         U    A            AAAUAACGGUUUA 
  130       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-1298_5p
mirBase accessionMIMAT0025060
Sequence 
0- UUCAUUCGGCUGUCCAGAUGUA -22
Get sequence
Proposed targets TargetScanVert: rno-miR-1298
miRDB: MIMAT0025060
Star sequence

Rno-Mir-1298_3p*
mirBase accessionNone
Sequence 
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence