MirGeneDB ID | Bta-Mir-1298 |
Family name |
MIR-1298 (all species) |
Seed |
UCAUUCG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-1298
|
Paralogues |
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Orthologues |
Cfa-Mir-1298
Cja-Mir-1298
Cpo-Mir-1298
Eca-Mir-1298
Ete-Mir-1298
Hsa-Mir-1298
Laf-Mir-1298
Mml-Mir-1298
Mmr-Mir-1298
Mmu-Mir-1298
Ocu-Mir-1298
Pab-Mir-1298
Rno-Mir-1298
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
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Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 63075823-63075896 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGAGCUGUUGGAAAGAUGAGAAGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCUGAUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUUGCUUUUCGGACUCGACUGGAUCCCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAGCUGUUGGAAAGAU--| U U C UCCAAGUACCCUG
GAGAAGU AAGAGUUCA UCGG UGUCCAGAUGUA A
CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U
CUCCCUAGGUCAGCUCAGG^ U U A AAAUAACGGUUUA
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-1298_5p |
mirBase accession | MIMAT0009970 |
Sequence |
0- UUCAUUCGGCUGUCCAGAUGUA -22
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-1298
|
Star sequence |
Bta-Mir-1298_3p* |
mirBase accession | None |
Sequence |
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence
|