MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-1298

Family name MIR-1298 (all species)
Seed UCAUUCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-1298
Paralogues
Orthologues Bta-Mir-1298  Cfa-Mir-1298  Cja-Mir-1298  Eca-Mir-1298  Ete-Mir-1298  Hsa-Mir-1298  Laf-Mir-1298  Mml-Mir-1298  Mmr-Mir-1298  Mmu-Mir-1298  Ocu-Mir-1298  Pab-Mir-1298  Rno-Mir-1298 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_46: 5210415-5210488 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGAGCUAUUGGAGAGAUGAAGAGUUAAGAGUUCAUUCAGAUGUUCAGAUGUAUCCAAGUACCUAGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCAUGAGUCGCCUGGAAUUCU
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Structure
        10          20        30        40        50        60      
AGAGCUAUUGGAGAGAU--|      U         U    A            UCCAAGUACCUAG 
                   GAAGAGU AAGAGUUCA UCAG UGUUCAGAUGUA             U
                   CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU             U
UCUUAAGGUCCGCUGAGUA^      C         U    A            AAAUAACGGUUUA 
  130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-1298_5p

mirBase accessionMIMAT0047417
Sequence
0- UUCAUUCAGAUGUUCAGAUGUA -22
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Star sequence

Cpo-Mir-1298_3p*

mirBase accessionMIMAT0047418
Sequence
52- CAUCUGGGCAACUGAUUGAACU -74
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