MirGeneDB ID | Cja-Mir-1298 |
Family name |
MIR-1298 (all species) |
Seed |
UCAUUCA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1298
Cfa-Mir-1298
Cpo-Mir-1298
Eca-Mir-1298
Ete-Mir-1298
Hsa-Mir-1298
Laf-Mir-1298
Mml-Mir-1298
Mmr-Mir-1298
Mmu-Mir-1298
Ocu-Mir-1298
Pab-Mir-1298
Rno-Mir-1298
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 107017742-107017817 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAGCUGUUGGAGAGAUGAAAAGUUAAGGGUUCAUUCAGCUGUCCAGAUGUAUCCAAGUACCUUGUGUAAUUUGGCAAUAAAUACAUCUGGGCAACUGACUGAACUUUUCGCUUUUCACGACUCAGCUGGAACCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAGCUGUUGGAGAGAU--| U U C UCCAAGUACCUUGU
GAAAAGU AAGGGUUCA UCAG UGUCCAGAUGUA G
CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U
UCCCAAGGUCGACUCAGCA^ C C A AAAUAACGGUUUAA
130 120 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-1298_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUCAUUCAGCUGUCCAGAUGUA -22
Get sequence
|
Star sequence |
Cja-Mir-1298_3p* (predicted) |
mirBase accession | None |
Sequence |
54- CAUCUGGGCAACUGACUGAACU -76
Get sequence
|