| MirGeneDB ID | Cja-Mir-1298 |
|---|---|
| Family name | MIR-1298 (all species) |
| Seed | UCAUUCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1298 Cfa-Mir-1298 Cpo-Mir-1298 Eca-Mir-1298 Ete-Mir-1298 Hsa-Mir-1298 Laf-Mir-1298 Mml-Mir-1298 Mmr-Mir-1298 Mmu-Mir-1298 Ocu-Mir-1298 Pab-Mir-1298 Rno-Mir-1298 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 107017742-107017817 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGCUGUUGGAGAGAUGAAAAGUUAAGGGUUCAUUCAGCUGUCCAGAUGUAUCCAAGUACCUUGUGUAAUUUGGCAAUAAAUACAUCUGGGCAACUGACUGAACUUUUCGCUUUUCACGACUCAGCUGGAACCCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAGCUGUUGGAGAGAU--| U U C UCCAAGUACCUUGU GAAAAGU AAGGGUUCA UCAG UGUCCAGAUGUA G CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U UCCCAAGGUCGACUCAGCA^ C C A AAAUAACGGUUUAA 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-1298_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCAUUCAGCUGUCCAGAUGUA -22
Get sequence
|
| Star sequence | Cja-Mir-1298_3p* (predicted) |
| mirBase accession | None |
| Sequence |
54- CAUCUGGGCAACUGACUGAACU -76
Get sequence
|
