| MirGeneDB ID | Ete-Mir-1298 |
|---|
| Family name |
MIR-1298 (all species) |
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| Seed |
UCAUUCG |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-1298
Cfa-Mir-1298
Cpo-Mir-1298
Hsa-Mir-1298
Mml-Mir-1298
Mmu-Mir-1298
Ocu-Mir-1298
Rno-Mir-1298
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(echTel2) |
JH980336: 11975080-11975153 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CUGUGAGAGGAAAAUAUGAGGAGUUAAGAGUUCAUUCGGAUGUCCAGAUGUAUCCAAGUACCCCGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCAUAACUCAACUGGAAUCCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CUGUGAGAGGAAAAUAU--| U U A UCCAAGUACCCCG
GAGGAGU AAGAGUUCA UCGG UGUCCAGAUGUA U
CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U
UCCUAAGGUCAACUCAAUA^ C U A AAAUAACGGUUUA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ete-Mir-1298_5p |
| mirBase accession | None |
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| Sequence |
0- UUCAUUCGGAUGUCCAGAUGUA -22
Get sequence
|
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| Star sequence |
Ete-Mir-1298_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence
|
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