| MirGeneDB ID | Pab-Mir-1298 |
|---|---|
| Family name | MIR-1298 (all species) |
| Seed | UCAUUCG |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1298 Cfa-Mir-1298 Cja-Mir-1298 Cpo-Mir-1298 Eca-Mir-1298 Ete-Mir-1298 Hsa-Mir-1298 Laf-Mir-1298 Mml-Mir-1298 Mmr-Mir-1298 Mmu-Mir-1298 Ocu-Mir-1298 Rno-Mir-1298 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 120561328-120561403 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AGAGCUGUUGGAGAGACGAGGAGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCUGUGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGACUGAACUUUUCACUUUUCAAGAUUCAGCUGGAACCCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAGCUGUUGGAGAGAC--| U U C UCCAAGUACCCUGU GAGGAGU AAGAGUUCA UCGG UGUCCAGAUGUA G CUUUUCA UUUUCAAGU AGUC ACGGGUCUACAU U UCCCAAGGUCGACUUAGAA^ C C A AAAUAACGGUUUAU 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-1298_5p |
| mirBase accession | None |
| Sequence |
0- UUCAUUCGGCUGUCCAGAUGUA -22
Get sequence
|
| Star sequence | Pab-Mir-1298_3p* |
| mirBase accession | None |
| Sequence |
54- CAUCUGGGCAACUGACUGAACU -76
Get sequence
|
