| MirGeneDB ID | Cfa-Mir-1298 |
|---|
| Family name |
MIR-1298 (all species) |
|---|
| Seed |
UCAUUCG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1298
Cja-Mir-1298
Cpo-Mir-1298
Eca-Mir-1298
Ete-Mir-1298
Hsa-Mir-1298
Laf-Mir-1298
Mml-Mir-1298
Mmr-Mir-1298
Mmu-Mir-1298
Ocu-Mir-1298
Pab-Mir-1298
Rno-Mir-1298
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(canFam3_add) |
chrX: 87468912-87468985 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAGCUGUUGGAAAGAGGAGGAGUUAAGAGUUCAUUCGGCUGUCCAGAUGUAUCCAAGUACCCUGUUAUUUGGCAAUAAAUACAUCUGGGCAACUGAUUGAACUUUUCGCUUUUCACGACUCUACUGGAACCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGAGCUGUUGGAAAGAG--| U U C UCCAAGUACCCUG
GAGGAGU AAGAGUUCA UCGG UGUCCAGAUGUA U
CUUUUCG UUUUCAAGU AGUC ACGGGUCUACAU U
CUCCAAGGUCAUCUCAGCA^ C U A AAAUAACGGUUUA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Mir-1298_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCAUUCGGCUGUCCAGAUGUA -22
Get sequence
|
|---|
| Star sequence |
Cfa-Mir-1298_3p* |
| mirBase accession | None |
|---|
| Sequence |
52- CAUCUGGGCAACUGAUUGAACU -74
Get sequence
|
|---|
