Mir-8908-P1b

MirGeneDB ID

Cfa-Mir-8908-P1b

Family name

MIR-8908 (all species)

Seed

AUUAGGA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-8908a-2

Paralogues

Cfa-Mir-8908-P1a1 Cfa-Mir-8908-P1a2 Cfa-Mir-8908-P1c Cfa-Mir-8908-P1d Cfa-Mir-8908-P2 Cfa-Mir-8908-P3 Cfa-Mir-8908-P4a1 Cfa-Mir-8908-P4a2 Cfa-Mir-8908-P4b Cfa-Mir-8908-P4c Cfa-Mir-8908-P5 Cfa-Mir-8908-P6 Cfa-Mir-8908-P7 Cfa-Mir-8908-P8

Orthologues

Node of Origin (locus)

C. familiaris

Node of Origin (family)

C. familiaris

Genome context
(canFam3_add)

chrX: 114687030-114687089 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8908-P1b)

Mir-8908-P3 chrX: 114675836-114675892 [-] UCSC Ensembl
Mir-8908-P5 chrX: 114676848-114676903 [-] UCSC Ensembl
Mir-8908-P2 chrX: 114678505-114678561 [-] UCSC Ensembl
Mir-8908-P4a2 chrX: 114679976-114680034 [-] UCSC Ensembl
Mir-8908-P1c chrX: 114680911-114680970 [-] UCSC Ensembl
Mir-8908-P1a2 chrX: 114684100-114684159 [-] UCSC Ensembl
Mir-8908-P4b chrX: 114686169-114686227 [-] UCSC Ensembl
Mir-8908-P1b chrX: 114687030-114687089 [-] UCSC Ensembl
Mir-8908-P4a1 chrX: 114688877-114688935 [-] UCSC Ensembl
Mir-8908-P1a1 chrX: 114689813-114689872 [-] UCSC Ensembl
Mir-8908-P6 chrX: 114717103-114717160 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUCUUCCCGCGUAACGUGUGUAGUGCUCUGCUGAGGAAGGUGCUGGUUGCAUUCAUUCAUAAGAGUAAUUAGGACCUCCCUGAGCGGAGUAAUGCUCACCUGAAGGACGUCUGCAGUG

Get precursor sequence

Structure

        10          20        30        40        50         
CCGUCUUCCCGCGUAAC--|  U   G         G   A    G        AUUCAU 
                   GUG GUA UGCUCUGCU AGG AGGU CUGGUUGC      U
                   CAC CGU AUGAGGCGA UCC UCCA GAUUAAUG      C
GUGACGUCUGCAGGAAGUC^  U   A         G   C    G        AGAAUA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-8908-P1b_5p*

mirBase accession

None

Sequence

0- UGCUGAGGAAGGUGCUGGUUGC -22

Get sequence

Mature sequence

Cfa-Mir-8908-P1b_3p

mirBase accession

MIMAT0034429

Sequence

38- AAUUAGGACCUCCCUGAGCGGA -60

Get sequence