Mir-8908-P4a2

MirGeneDB ID

Cfa-Mir-8908-P4a2

Family name

MIR-8908 (all species)

Seed

UUAGCGC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-8908d-2

Paralogues

Cfa-Mir-8908-P1a1 Cfa-Mir-8908-P1a2 Cfa-Mir-8908-P1b Cfa-Mir-8908-P1c Cfa-Mir-8908-P1d Cfa-Mir-8908-P2 Cfa-Mir-8908-P3 Cfa-Mir-8908-P4a1 Cfa-Mir-8908-P4b Cfa-Mir-8908-P4c Cfa-Mir-8908-P5 Cfa-Mir-8908-P6 Cfa-Mir-8908-P7 Cfa-Mir-8908-P8

Orthologues

Node of Origin (locus)

C. familiaris

Node of Origin (family)

C. familiaris

Genome context
(canFam3_add)

chrX: 114679976-114680034 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8908-P4a2)

Mir-8908-P3 chrX: 114675836-114675892 [-] UCSC Ensembl
Mir-8908-P5 chrX: 114676848-114676903 [-] UCSC Ensembl
Mir-8908-P2 chrX: 114678505-114678561 [-] UCSC Ensembl
Mir-8908-P4a2 chrX: 114679976-114680034 [-] UCSC Ensembl
Mir-8908-P1c chrX: 114680911-114680970 [-] UCSC Ensembl
Mir-8908-P1a2 chrX: 114684100-114684159 [-] UCSC Ensembl
Mir-8908-P4b chrX: 114686169-114686227 [-] UCSC Ensembl
Mir-8908-P1b chrX: 114687030-114687089 [-] UCSC Ensembl
Mir-8908-P4a1 chrX: 114688877-114688935 [-] UCSC Ensembl
Mir-8908-P1a1 chrX: 114689813-114689872 [-] UCSC Ensembl
Mir-8908-P6 chrX: 114717103-114717160 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUCUGCAGGCCACGCUGAGUUUGGGGCCCUACCCAGAAAGGUGCUGAUGAGGCAGGAUACAGAUUAUUAGCGCCUGACUGAGUGGGGUCCCAAUCAGUAACAGAACUGCCCGUGGCA

Get precursor sequence

Structure

        10            20        30        40        50         
UCCUCUGCAGGCCACGC----|  GU            C   AA            GGCAGG 
                     UGA  UUGGGGCCCUAC CAG  AGGUGCUGAUGA      \
                     ACU  AACCCUGGGGUG GUC  UCCGCGAUUAUU      A
ACGGUGCCCGUCAAGACAAUG^  --            A   AG            AGACAU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-8908-P4a2_5p*

mirBase accession

None

Sequence

0- CUACCCAGAAAGGUGCUGAUGA -22

Get sequence

Mature sequence

Cfa-Mir-8908-P4a2_3p

mirBase accession

MIMAT0034420

Sequence

37- AUUAGCGCCUGACUGAGUGGGG -59

Get sequence