MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-8908-P1c

Family name MIR-8908 (all species)
Seed AUUAGGA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-8908a-4
Paralogues Cfa-Mir-8908-P1a1  Cfa-Mir-8908-P1a2  Cfa-Mir-8908-P1b  Cfa-Mir-8908-P1d  Cfa-Mir-8908-P2  Cfa-Mir-8908-P3  Cfa-Mir-8908-P4a1  Cfa-Mir-8908-P4a2  Cfa-Mir-8908-P4b  Cfa-Mir-8908-P4c  Cfa-Mir-8908-P5  Cfa-Mir-8908-P6  Cfa-Mir-8908-P7  Cfa-Mir-8908-P8 
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)		 chrX: 114680911-114680970 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8908-P1c)		 Mir-8908-P3 chrX: 114675836-114675892 [-] UCSC Ensembl
Mir-8908-P5 chrX: 114676848-114676903 [-] UCSC Ensembl
Mir-8908-P2 chrX: 114678505-114678561 [-] UCSC Ensembl
Mir-8908-P4a2 chrX: 114679976-114680034 [-] UCSC Ensembl
Mir-8908-P1c chrX: 114680911-114680970 [-] UCSC Ensembl
Mir-8908-P1a2 chrX: 114684100-114684159 [-] UCSC Ensembl
Mir-8908-P4b chrX: 114686169-114686227 [-] UCSC Ensembl
Mir-8908-P1b chrX: 114687030-114687089 [-] UCSC Ensembl
Mir-8908-P4a1 chrX: 114688877-114688935 [-] UCSC Ensembl
Mir-8908-P1a1 chrX: 114689813-114689872 [-] UCSC Ensembl
Mir-8908-P6 chrX: 114717103-114717160 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUCUUCCCACAUACUGUGUGCAGUGCUCUGCUGAGGAAGGUGCUCAUUGCAUUCAUUUAUAAGAGUAAUUAGGACCUCCCUGAGCGGAGUAAUGCUCACUUAAAGUACGUCUGCGGUG
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Structure
        10          20        30        40        50         
CCGUCUUCCCACAUACU--|  U   G         G   A    G  C     AUUCAU 
                   GUG GCA UGCUCUGCU AGG AGGU CU AUUGC      U
                   CAC CGU AUGAGGCGA UCC UCCA GA UAAUG      U
GUGGCGUCUGCAUGAAAUU^  U   A         G   C    G  U     AGAAUA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-8908-P1c_5p*
mirBase accessionMIMAT0034428
Sequence 
0- UGCUGAGGAAGGUGCUCAUUGC -22
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Mature sequence

Cfa-Mir-8908-P1c_3p
mirBase accessionMIMAT0034429
Sequence 
38- AAUUAGGACCUCCCUGAGCGGA -60
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