MirGeneDB ID | Cja-Mir-185 |
Family name |
MIR-185 (all species) |
Seed |
GGAGAGA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-185
Cfa-Mir-185
Cpo-Mir-185
Dno-Mir-185
Eca-Mir-185
Ete-Mir-185
Hsa-Mir-185
Laf-Mir-185
Mml-Mir-185
Mmr-Mir-185
Mmu-Mir-185
Ocu-Mir-185
Pab-Mir-185
Rno-Mir-185
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 209262120-209262175 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGGCCUGGCUCGAGCAGGGGGCGAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUCCCUCCCAAUGACCGCGUCUUCGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGGCCUGGCUCGAGCA--| C UG A G AUGGUC
GGGGG GAGGGAU GAG GAAAG CAGUUCCUG \
CCCUC CUUCCUG CUC CUUUC GUCGGGGAC C
GCUGCUUCUGCGCCAGUAA^ C GU - G CCCUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cja-Mir-185_5p |
mirBase accession | None |
Sequence |
0- UGGAGAGAAAGGCAGUUCCUGA -22
Get sequence
|
Star sequence |
Cja-Mir-185_3p* |
mirBase accession | None |
Sequence |
35- AGGGGCUGGCUUUCCUCUGGU -56
Get sequence
|